A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping

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Ollitrault P., TEROL J., CHEN C., FEDERICI C. T., LOTFY S., HIPPOLYTE I., ...Daha Fazla

BMC GENOMICS, cilt.13, 2012 (SCI-Expanded) identifier identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 13
  • Basım Tarihi: 2012
  • Doi Numarası: 10.1186/1471-2164-13-593
  • Dergi Adı: BMC GENOMICS
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus
  • Anahtar Kelimeler: C. clementina, C. sinensis, C. maxima, SSRs, SNPs, Indels, Genetic maps, BAC END SEQUENCES, MICROSATELLITE MARKERS, SSR MARKERS, HOMEOLOGOUS RECOMBINATION, GENOTYPING ERRORS, MISMATCH REPAIR, LINKAGE MAPS, EST, TRANSFERABILITY, CONSTRUCTION
  • Çukurova Üniversitesi Adresli: Evet

Özet

Background: Most modern citrus cultivars have an interspecific origin. As a foundational step towards deciphering the interspecific genome structures, a reference whole genome sequence was produced by the International Citrus Genome Consortium from a haploid derived from Clementine mandarin. The availability of a saturated genetic map of Clementine was identified as an essential prerequisite to assist the whole genome sequence assembly. Clementine is believed to be a 'Mediterranean' mandarin x sweet orange hybrid, and sweet orange likely arose from interspecific hybridizations between mandarin and pummelo gene pools. The primary goals of the present study were to establish a Clementine reference map using codominant markers, and to perform comparative mapping of pummelo, sweet orange, and Clementine.