The primary objective of this paper is to present the results of the study of the effects of varying ionospheric conditions on the GPS signal tracking in the southern polar region. In the first stage of this study, the data collected by the OSU/USGS team in October-November 2003 within the TAMDEF (Transantarctic Mountains Deformation) network were used together with some IGS Antarctic stations to study the effect of severe ionospheric storms on GPS hardware. Note that TAMDEF is a joint USGS/OSU project with the primary objective of measuring crustal motion in the Transantarctic Mountains of Southern Victoria Land using GPS techniques. This study included ten Antarctic stations equipped with different dual-frequency GPS hardware, and the data were evaluated for two 24-hour periods of severe ionospheric storm (2003/10/29) and moderate ionospheric conditions (minor storm of 2003/11/11). The results of this study were presented at the IAG Assembly in Cairns, Australia (Grejner-Brzezinska et al., 2005).